Datasets on Cases, Deaths, Transmission, Responses
๐ฌWhatsApp Chat for "Data" ๐ฌ
Link Drop - for datasets please, not general 'data related'
Crowdsourced record of workers dying of COVID-19 or falling ill at work
๐https://docs.google.com/spreadsheets/u/2/d/1aGSFDB7Rv0Lc69PqNxPorv2QCfwD09llFA1uUh2D0ps/htmlview
EuroMOMO
๐ช๐บ๐http://www.euromomo.eu/
EuroMOMO is a European mortality monitoring activity, aiming to detect and measure excess deaths related to seasonal influenza, pandemics and other public health threats. Official national mortality statistics are provided weekly from the 24 European countries in the EuroMOMO collaborative network, supported by the European Centre for Disease Prevention and Control (ECDC) and the World Health Organization (WHO).
The COVID-19 Racial Data Tracker
https://covidtracking.com/race
The COVID Racial Data Tracker is a collaboration between the COVID Tracking Project and the Center for Antiracist Research. Together, weโre gathering the most complete race and ethnicity data on COVID-19 in the United States.
โ๏ธ Edit this document to make it better โ๏ธ
The core content of this Data section focuses on data sets that can be downloaded and analyzed in formats such as XML and .csv. The section begins with repositories of existing data sets, followed by key existing data sets categorized by type. Later in the data section, there are requests for data sets people would like to analyze. Country-specific and subnational data sets are listed by country at the end of the Data section.
Other relevant sections of this handbook
Data Visualizations and Infographics
To keep the Data section focused on data sets, the various charts, graphics, and maps created with the data go in the Infographics section.
See also:
๐https://coronavirustechhandbook.com/infographics
Data Tools
Scripts, codes, methods and technical resources for working with COVID-19 data
See also:
๐ https://coronavirustechhandbook.com/data-tools
Self-reported Data and Crowdsourcing
Crowdsourcing epidemiological data,
See also:
๐https://coronavirustechhandbook.com/self-reporting
Data Governance and Data Standards
Recommendations for how to work with COVID-19 data.
See also:
๐https://coronavirustechhandbook.com/data-governance
Repositories of Existing Datasets
List of data on asymptomatic transmission.
๐https://twitter.com/ErinSandersNP/status/1250081382241579008
Data Collaboratives in Response to COVID-19
๐https://docs.google.com/document/d/1JWeD1AaIGKMPry_EN8GjIqwX4J4KLQIAqP09exZ-ENI/edit#
A repository for data collaboratives seeking to address the spread of COVID-19 and its secondary effects. Created by The Governance Lab (GovLab) based at New York University.
Severe acute respiratory syndrome Coronavirus 2 data hub
Search, retrieve, and analyze SARS-CoV-2 GenBank data, from US National Library of Medicine (NLM).
COVID-19 Data Providers by Amass Insights
๐https://docs.google.com/spreadsheets/d/1N_aVyjQWBzPT_MHiAWyoEqNgX4nKkoU7FznVZpvFTu0/edit?usp=sharing
Directory of Coronavirus-related data providers categorised by geographical focus, type of data, data features, status (complete?), date last updated, date added.
COVID-19: a living systematic map of the evidence
Produced by the Evidence for Policy and Practice research center at University College, London. Focuses on evidence synthesis and research application. An Evidence Map categorises datasets by topic (e.g. diagnosis, health impacts, economic impacts). Updates weekly.
COVID-19 Pandemic
๐๐https://data.humdata.org/event/covid-19
Humanitarian Data Exchange repository of COVID-19 datasets with option to filter by variables relevant to humanitarian response.
Open source COVID-19
๐http://open-source-covid-19.weileizeng.com/
A global collection of Open Source projects during COVID-19. Includes data, APIs, dashboards, research and crowd collected lists.
COVID-19 Data Hub
๐https://odileeds.org/projects/open-data-saves-lives/covid19/data-hub/
Open Data Institute (ODI) Leeds:This is a document to openly collate useful open data sources and references related to COVID-19, to support our collaborative #OpenDataSavesLives coronavirus work
Fighting Coronavirus with Tech and Data
๐https://www.notion.so/d44664abc5424dd191fc7bab29685983?v=ae0f06065b0c47e2afbdd7f4fca4e2c4
COVID-19 Data sources compiled by GraphExt, a data science for business firm.
COVID-19 Data Repository at openICPSR
๐https://www.openicpsr.org/openicpsr/covid19
A free self-publishing option for social/behavioral datasets related to COVID-19 provided by the Inter-university Consortium for Political and Social Research.
Analysis of data related to COVID-2019, first reported in Wuhan, China
๐https://github.com/beoutbreakprepared/nCoV2019
Includes data on comorbidities from Global Burden of Disease.
Possible COVID-19 datasets
๐https://docs.google.com/spreadsheets/d/1w4czUYSQ1AfOxw-H3Zei5LZAvNkQrSAGeIu60aeXkZs/edit#gid=0
Table of Possible Covid Datasets that includes the source of the data, notable features, a short description, how to access the data and a link [around 95 datasets as of 21 March 2020].
IIPC Collaborative Collection: Covid-19 outbreak
๐https://archive-it.org/collections/13529
A collection to preserve web content related to the ongoing Novel Coronavirus (Covid-19) outbreak. Created by the Content Development Group of the International Internet Preservation Consortium in collaboration with Archive-It.
Global Coronavirus Dataset Library
๐https://lionbridge.ai/datasets/coronavirus-datasets-from-every-country/
Some of the most widely-used coronavirus datasets. This article will be continuously updated, as new COVID-19 datasets become available.
Existing Datasets by Features
Datasets and databases for the study of COVID-19 categorize by topic. Country-specific data is listed by country at the end of the Data section.
Johns Hopkins University Case Data and Adaptations
The dataset and dashboard from Johns Hopkins University (JHU) have played a major role in tracking cases of COVID-19. This section includes a link to the JHU data as well as adaptations of that data.
Coronavirus cases, provided by Johns Hopkins CSSE
๐๐https://github.com/CSSEGISandData/COVID-19
Data repository for the 2019 Novel Coronavirus Visual Dashboard operated by the Johns Hopkins University Center for Systems Science and Engineering (JHU CSSE). Also, Supported by ESRI Living Atlas Team and the Johns Hopkins University Applied Physics Lab (JHU APL). Includes cases, km, recoveries. Regular updates and data from the 14 largest government agencies.
Coronavirus COVID-19 Data Repository by Johns Hopkins CSSE
The Johns Hopkins daily US and worldwide figures on COVID-19. CSV.
Coronavirus time series data on cases
๐๐https://github.com/datasets/covid-19
Sourced from Johns Hopkins CSSE, consolidated into normalized time series
Coronavirus time series
๐๐https://datahub.io/core/covid-19
Coronavirus time series listing confirmed cases, deaths and recoveries.
Coronavirus Dataset
๐๐https://www.kaggle.com/sudalairajkumar/novel-corona-virus-2019-dataset
Day level information on COVID-19 affected cases based on Johns Hopkins dataset.
COVID-19 cases, using data from Johns Hopkins CSSE and the New York Times
๐https://covid-19.datasettes.com/
Johns Hopkins daily reports loaded into Datasette, so you can run SQL queries against it and export JSON or CSV.
Case Data
This section contains case data from sources other than Johns Hopkins University. Country-specific and subnational datasets are listed at the end of the data section.
European Centre for Disease Control (ECDC): Download todayโs data on the geographic distribution of COVID-19 cases worldwide
Daily worldwide figures on COVID-19 cases and deaths from the ECDC. Excel, CSV, JSON, XML.
A dataset of 1000 early cases
๐ฃ [email protected]
Each record includes First confirmed imported COVID-19 pneumonia patient in Shenzhen (from Wuhan): male, 66, Shenzhen residence, visited relatives in Wuhan on 12/29/2019, symptoms onset on 01/03/2020, returned to Shenzhen and sought medical care on 01/04/2020, hospitalized on 01/11/2019, sample sent to China CDC for testing on 01/18/2020, confirmed on 01/19/2020. 8 others under medical observation, contact tracing ongoing.
High Contagiousness and Rapid Spread of Severe Acute Respiratory Syndrome Coronavirus 2
CH๐https://wwwnc.cdc.gov/eid/article/26/7/20-0282_article
Appendix 1 of this
2019โ20 Coronavirus pandemic cases / WHO situation reports
๐๐https://en.wikipedia.org/wiki/Template:2019%E2%80%9320_coronavirus_pandemic_data/
Daily case data by country from World Health Organization situation reports.
Rolling, last-10-day Coronavirus case data spreadsheet, worldwide, by continent, and by country
๐๐https://spreadsheetjournalism.com/2020/04/22/corona-virus-spreadsheet-requires-excel-365/
Data source; The European Centre for Disease Prevention and Control. The workbook also features a sheet enabling the user to enter any country name in an auto-complete text box along with any time span, disclosing data for that country across the span. NOTE: requires access to the Excel 365 version.
Trial Data
Dimensions COVID-19 publications, data sets, clinical trials
Maintained by Dimensions from Digital Science, this spreadsheet contains detailed data about COVID-19 clinical trials, publications, and other databases.
ClinicalTrials.gov
๐๐https://clinicaltrials.gov/ct2/results?cond=COVID&term=&cntry=&state=&city=&dist=
US National Institutes of Health (NIH) National Library of Medicine (NLM) database of COVID-19 clinical trials around the world. Showing 360+ studies as of April 7, 2020.
Policy and Government Response Data
Dataset of COVID-19 containment and mitigation measures v0.2
๐๐http://epidemicforecasting.org/containment
The COVID-19 forecasting project at Oxford curates a database of all sufficiently large global containment and mitigation measures focused on reducing transmission.
COVID-19 policy dataset
๐๐https://figshare.com/articles/CORD-19-policy_dataset/12055860/2
A zip file of policy documents from Jan 1st - Mar 31st 2020 relating to the COVID-19 pandemic. Provided by policy consulting firm Overton.
ACAPS COVID-19: Government Measures Dataset
๐๐ https://www.acaps.org/covid19-government-measures-dataset
The COVID-19 Government Measures Dataset puts together all the measures implemented by governments worldwide in response to the Coronavirus pandemic. Data collection includes secondary data review. The researched information available falls into five categories: - Social distancing - Movement restrictions - Public health measures - Social and economic measures - Human rights implications. Each category is broken down into several types of measures. ACAPS consulted government, media, United Nations, and other organisational sources.
COVID-19 GovMeasures
๐๐https://docs.google.com/spreadsheets/d/1ODDaxKJMG2QBy00-KC0od75SIdNzn_Nuk_d_SAMedYE/edit#gid=0
An anonymous open spreadsheet summarizing responses by country.
Search and Social Media
Coronavirus searches by date/lang/country from AnswerThePublic
๐https://docs.google.com/spreadsheets/d/1roQeJkDBH2d2UGV85HzwAmxOHwehV2te4X7YzRcWqDI
๐ฃ [email protected]
Further search term variation data on coronavirus (i.e., what people google when they google โcoronavirusโ) Geographical scope: Various languages and countries (including Italy, Netherlands, France, Germany, Belgium, US, Mexico, Brazil, Colombia, Norway, Switzerland, UK)
Data has been collected almost daily since 20/01/2020
COVID-19 Twitter chatter dataset for scientific use
๐๐http://www.panacealab.org/covid19/
Dataset of tweets acquired from the Twitter Stream related to COVID-19. Includes all language, with English, Spanish, and French most prevalent.
COVID-19-TweetIDs
๐๐https://github.com/echen102/COVID-19-TweetIDs
The repository contains an ongoing collection of tweets IDs associated with COVID-19.
Coronavirus search term variations and volume - various countries
๐๐https://docs.google.com/spreadsheets/d/1elbDJU7WPPv5s2-rS8K9M53Og-gvCm5pV2kN87BLxpk/edit?usp=sharing
๐ฃhttps://twitter.com/samgilb
Long lists of Coronavirus keywords with estimated search volumes for 9 countries, sourced from the search engine marketing tool SEMrush.
Bing Coronavirus search query set
๐๐ https://github.com/microsoft/BingCoronavirusQuerySet
๐ฃ [email protected]
This dataset was curated from the Bing search logs (desktop users only) over the period of Jan 1st, 2020 โ April 18th, 2020. Only searches that were issued many times by multiple users were included. Dataset includes queries from all over the world that had an intent related to the Coronavirus or COVID-19. In some cases this intent is explicit in the query itself, e.g. โCoronavirus updates Seattleโ in other cases it is implicit , e.g. โShelter in placeโ .Implicit intent of search queries (e.g. Toilet paper) were extracted by using Random walks on the click graph approach as outlined in this paper by Microsoft Research. All personal data was removed.
Location and Movement
Location and movement data relevant to, but not necessarily specific to, COVID-19.
Google Mobility Reports
๐๐https://www.blog.google/technology/health/covid-19-community-mobility-reports
Country-level reports from Google reports chart movement trends over time by geography, across different categories of places. Reports do not include raw data.
Apple Mobility data
๐๐ https://www.apple.com/covid19/mobility
Data from Apple on changes in use of the their 'driving', 'walking' and 'transit' queries to their 'Maps' app.
OpenTable Restaurant Performance Data
Data on restaurant business by the booking platform OpenTable with daily updates.
Citymapper Mobility Index
๐๐https://citymapper.com/cmi
Percentage of people moving in cities compared to January.
Phone Location Data
๐ฃParker Ence: [email protected]
Veraset Data. Free dataset (for use for COVID-19 modelling only) of anonymous always-on GPS pings from smart phones. Hourly pings from roughly 1.5% of worldwide phones every hour (and pings from almost 10% of U.S. phones). Available on request.
Global Footfall Trends
๐๐https://purple.ai/global-footfall-trends/
Year-on-year and week-to-week comparison by geographic region/venue type from guest WiFi analytics firm purpleAI. NOTE: There doesn't seem to be any raw data available here, only charts.
Healthcare and Hospital Data
Datasets about healthcare and hospitals relevant to, but not necessarily specific to, COVID-19.
Global Dataset on ICU, Ventilators and Critical Care Capacity
๐๐https://docs.google.com/spreadsheets/d/1nSDwFWmnqvcP5Ut_epcntxjZrR8PcnU6enupT8G5d0s/
Global Dataset on ICU, Ventilators and Critical Care Capacity from Our World in Data.
Data on rates of testing
๐๐https://github.com/owid/covid-19-data/tree/master/public/data/testing
Data by Our World in Data on rate of Coronavirus testing for countries around the world.
Details of primers used in multiplex PCRs for SARS-CoV-2 genome amplification
๐๐ญ๐ฐhttps://www.medrxiv.org/content/10.1101/2020.03.30.20045740v2.supplementary-material
Dataset included as supplementary material to the pre-print "A territory-wide study of early COVID-19 outbreak in Hong Kong community."
The Global Healthsites Mapping Project
๐๐https://healthsites.io/
An open data commons of health facility data built with OpenStreetMap.
Healthsites database
๐๐https://github.com/healthsites/healthsites/
Healthsites.io establishes this data and the tools necessary to upload, manage and make healthcare facility data easily accessible.
Healthsites API
๐https://github.com/healthsites/healthsites/wiki/API
List of countries by hospital beds
๐๐https://en.wikipedia.org/wiki/List_of_countries_by_hospital_beds
Wikipedia page reporting hospital beds per 1000 people, based on OECD data.
Existing Datasets by Country
Countries are grouped by regions as organized by the UN Statistical Agency https://unstats.un.org/unsd/methodology/m49/
Africa
https://github.com๐ /dsfsi/covid19africa
Ghana
๐ฌ๐ญ๐https://ghanahealthservice.org/covid19/
Madagascar
Coronavirus search term variation data in French for Madagascar from Answer The Public (as at 6 April 2020): ๐https://docs.google.com/spreadsheets/d/1DBcm9Y6ZCOoh61RNeCjROpXTJ76RiFWh_cVABTaDRe8/edit#gid=0
South Africa
๐ฟ๐ฆ๐http://www.nicd.ac.za/diseases-a-z-index/covid-19/covid-19-situational-reports/
๐ฟ๐ฆ๐ https://github.com/dsfsi/covid19za
Americas
๐https://carpha.org/What-We-Do/Public-Health/Novel-Coronavirus
COVID-19 Situation Creports for populations in Caribbean region from CARPHA.
Brazil
Data and scripts to create a time series for Brazil from Ministry of Health data.
Canada
๐จ๐ฆ๐https://www150.statcan.gc.ca/n1/pub/71-607-x/71-607-x2020009-eng.htm
Downloadable data used to create Statistics Canada's economic dashboard and interactive case map.
Canada-wide
Collection of confirmed and presumptive positive caseslso titled the "Epidemiological Data from the COVID-19 Outbreak in Canada
Alberta Canada
COVID-19 Stats+Data by Government of Albertander the "Data export" tab, details include Zone and demographic information (gender and age group), case status.
Ontario
๐Status of COVID-19 cases from
๐ Confirmed positive cases of COVID-19 from
United States
U.S. Consumer Activity During COVID-19 Pandemic
๐บ๐ธ๐https://www.safegraph.com/dashboard/covid19-commerce-patterns
An interesting dataset showing how the pandemic has changed foot traffic to Airports, Costco stores, etc. They suggest their data is voluntarily sampled and is representative of the U.S. population.
COVID-19_US_County-level_Summaries
๐บ๐ธ๐ https://github.com/JieYingWu/COVID-19_US_County-level_Summaries
A machine readable dataset by people at Johns Hopkins University that aggregates relevant data from around ten governmental and academic sources on the county-level. The dataset contains more than 300 variables.
New York Times data on COVID-19 for US states and counties. CSVCOVID Tracking Project
๐บ๐ธ๐http://covidtracking.com/
Volunteer-driven project compiling the most complete testing data available for US states and territories.
Coronavirus Disease 2019 (COVID-19)
๐บ๐ธ๐https://www.cdc.gov/coronavirus/2019-ncov/index.html
US Centers for Disease Control and Prevention (CDC) Coronavirus data.
US CDC Data & Statistics
๐บ๐ธ๐https://www.cdc.gov/datastatistics/index.html
Health data from US Centers for Disease Control and Prevention (CDC). Not COVID-19 specific.
COVID-19 Cases in Massachusetts
๐บ๐ธ๐https://www.mass.gov/info-details/covid-19-cases-quarantine-and-monitoring#covid-19-cases-in-massachusetts-
Word document with tables breaking down data by county, demographics, and individual patients.
United States - Information by states
OH COVID-19 Dashboard
๐บ๐ธ๐https://coronavirus.ohio.gov/wps/portal/gov/covid-19/dashboards
Data from Ohio Department of Health and downloadable as CSV.
PA COVID-19
๐บ๐ธ๐https://www.health.pa.gov/topics/disease/Pages/Coronavirus.aspx
Pennsylvania cases by county.
TN Coronavirus cases
๐บ๐ธ๐http://arcg.is/19COL4
Total confirmed Coronavirus cases as reported by Department of Health. Data pulled nightly from TN Dept of Health website. Created by Vanderbilt Initiative for Interdisciplinary Geospatial Research (VIIGR).
TX COVID-19
๐บ๐ธ๐https://www.dshs.texas.gov/news/updates.shtm
Texas cases over time as Excel file.
VA COVID-19
๐บ๐ธ๐http://www.vdh.virginia.gov/surveillance-and-investigation/novel-coronavirus/
Virginia case datasets by age, sex, and race.
WA COVID-19
๐บ๐ธ๐https://www.doh.wa.gov/Emergencies/Coronavirus
Archive of daily reports from WA Includes table of cases and deaths by county.
WA COVID-19 gogle spreadsheet
๐บ๐ธ๐https://docs.google.com/spreadsheets/d/1bWjx_QDy-Mbg-ZUVUS-RP9hIVbxdAYJITSeSdjej4HQ/edit?usp=sharing
Google sheet compiling daily updates from Washington Department of Health.
United States - Information by Local Government (Cities and Counties)
NYC Coronavirus (COVID-19) data
๐บ๐ธ๐https://github.com/nychealth/coronavirus-data/blob/master/tests-by-zcta.csv
This repository contains data on Coronavirus (COVID-19) in New York City (NYC), updated daily. Data are assembled by the NYC Department of Health and Mental Hygiene (DOHMH) Incident Command System for COVID-19 Response (Surveillance and Epidemiology Branch in collaboration with Public Information Office Branch.
Asia
Hong Kong
๐https://data.gov.hk/en-data/dataset/hk-dh-chpsebcddr-novel-infectious-agent
๐ฎ๐ฉIndonesia
๐ฎ๐ฉ๐https://data.kemkes.go.id/data/dhis-web-commons/security/login.action#/yHsQKWcr6Sz
Indonesia- Requires log-in.
๐ฏ๐ตJapan
๐ฏ๐ต๐https://www.mhlw.go.jp/stf/seisakunitsuite/bunya/0000164708_00001.html
Japan Ministry of Health: COVID-19 information page (Japanese)
๐ฏ๐ต๐https://www.mhlw.go.jp/stf/seisakunitsuite/bunya/newpage_00032.html
Japan Ministry of Health: COVID-19 information page (English)
๐ฏ๐ต๐https://www.mhlw.go.jp/stf/seisakunitsuite/bunya/0000121431_00086.html
Japan Ministry of Health: COVID-19 infection count/status reports, by date (Japanese)
๐ฏ๐ต๐https://stopcovid19.metro.tokyo.lg.jp/en/
Tokyo COVID-19 Task Force
๐ต๐ฐPakistan
๐ต๐ฐ๐https://www.nih.org.pk/novel-coranavirus-2019-ncov/
Data from Pakistan
๐ธ๐ฌSingapore
๐ธ๐ฌ๐https://www.moh.gov.sg/covid-19
Ministry of Health Singapore (MOH)
๐ธ๐ฌ๐https://www.moh.gov.sg/covid-19/
Singapore MOH
๐ธ๐ฌ๐https://co.vid19.sg/
COVID-19 SG Dashboard
๐ฐ๐ทSouth Korea
๐ฐ๐ท๐https://www.cdc.go.kr/board/board.es?mid=a30402000000&bid=0030
Press releases, including updates on cases with detailed data on fatalities
๐ฐ๐ท๐https://hira-covid19.net/
South Korea provides open access to researchers for all COVID-19 patients based on their insurance claims for the past five years. Researchers must provide approval or exemption of the study from IRB review. To apply for research using this data, submit a 1-page research proposal either in Korean or English and a signed data use agreement as described in the Manual.
Europe
๐ช๐บ๐https://www.ecdc.europa.eu/en/publications-data
European Centre for Disease Prevention and Control
๐ช๐บ๐https://www.ecdc.europa.eu/en/geographical-distribution-2019-ncov-cases
European Centre for Disease Prevention and Control- Situational update worldwide
๐ช๐บ๐https://www.ecdc.europa.eu/en/cases-2019-ncov-eueea
ECDC-Europe data. Situational update for the EU/EEA and the UK by the ECDC
๐ช๐บ๐https://data.europa.eu/euodp/en/data/dataset/covid-19-coronavirus-data
EU Open Data portal on COVID-19. Direct access to the dataset of the latest available public data (daily situation)
๐ง๐ชBelgium/Belgiรซ
๐ง๐ช๐https://docs.google.com/spreadsheets/d/1AI4x1RHcnrEU7Qdn_H25sL9tHIgGN4-fCP20NDzTltk/edit?usp=sharing
Belgium Data (no source)
๐จ๐ฟCzech Republic
COVID-19: Overview of the current situation in the Czech Republic
๐จ๐ฟ๐https://onemocneni-aktualne.mzcr.cz/covid-19
Includes open datasets and newly validated datasets, especially reviews of hospitalized patients.
Estonia
๐ช๐ช๐http://www.koroonakaart.ee
Cases in the Republic of Estonia
๐ซ๐ฎFinland
๐ซ๐ฎ๐ https://korona.kans.io/
Source: Helsingin Sanomat (media) JSON API
๐ซ๐ฎ๐https://github.com/HS-Datadesk/koronavirus-avoindata#direct-interface-to-hs-data
๐ซ๐ทFrance
Donnรฉes des urgences hospitaliรจres et de SOS mรฉdecins relatives ร l'รฉpidรฉmie de COVID-19
๐ซ๐ท๐https://www.data.gouv.fr/fr/datasets/donnees-des-urgences-hospitalieres-et-de-sos-medecins-relatives-a-lepidemie-de-covid-19/ & https://github.com/opencovid19-fr/data
French government datasets on COVID-19.
๐ซ๐ท๐https://docs.google.com/spreadsheets/d/1elbDJU7WPPv5s2-rS8K9M53Og-gvCm5pV2kN87BLxpk/edit?usp=sharing
๐ฃhttps://twitter.com/samgilb
Long lists of coronavirus keywords with estimated search volumes, sourced from the search engine marketing tool SEMrush.
๐ซ๐ท๐ https://github.com/opencovid19-fr/data
Source: French Gov. Open data platform
๐ซ๐ท๐https://mapthenews.maps.arcgis.com/apps/opsdashboard/index.html#/5e09dff7cb434fb194e22261689e2887
Dataviz, French case numbers, updated on a daily basis
Source : Santรฉ publique France
๐ซ๐ท๐https://datastudio.google.com/u/0/reporting/279524b5-9699-49b1-8c1b-843c084711f4/page/5hFKB
SUIVI DU CORONAVIRUS EN FRANCE - Derniรจre mise ร jour : 31/03/2020
๐ฉ๐ชGermany
๐ฉ๐ช๐https://interaktiv.morgenpost.de/corona-virus-karte-infektionen-deutschland-weltweit/
Germany data
๐ฉ๐ช๐https://www.rki.de/DE/Content/InfAZ/N/Neuartiges_Coronavirus/Fallzahlen.html
Robert Koch instituteโs numbers of cases in Germany, by state
๐ฉ๐ช๐https://github.com/micgro42/COVID-19-DE
Robert Koch institute's numbers of cases in Germany as CSV timeline
๐ฉ๐ช๐https://www.rki.de/DE/Content/InfAZ/N/Neuartiges_Coronavirus/nCoV.html
German Case Numbers
๐ฌ๐ทGreece
๐ฌ๐ท๐https://docs.google.com/spreadsheets/d/1GVBY3Yy1wSzmmjwest78fVlNuH7GT7XirCWSHO7CZow/edit#gid=0
Greek case numbers, from the ministry of health press releases, updated every day
๐ญ๐บHungary
๐ญ๐บ๐https://atlo.team/koronamonitor
Hungarian case numbers and maps, updated every day
๐ญ๐บ๐https://koronavirus.sixdegrees.hu/
Another data source with daily updates and a rudimentary SIR forecast
๐ฎ๏ฟฝ๏ฟฝIceland
๐ฎ๐ธ๐https://www.covid.is/
Official data from the Department of Civil Protection and Emergency Management in dashboard
๐ฎ๐ธ๐https://www.almannavarnir.is/utgefid-efni/
Official daily status reports
๐ฎ๏ฟฝ๏ฟฝItaly
๐ฎ๐น๐ https://github.com/pcm-dpc/COVID-19
Italian data from government. The @DPCgov shared all latest #COVID19 data on @github: National trend - JSON data - Provinces data - Regions data - Summary cards - Areas
๐ฎ๐น๐https://docs.google.com/spreadsheets/d/1elbDJU7WPPv5s2-rS8K9M53Og-gvCm5pV2kN87BLxpk/edit?usp=sharing
๐ฃhttps://twitter.com/samgilb
Long lists of coronavirus keywords with estimated search volumes, sourced from the search engine marketing tool SEMrush.
๐ฎ๐น๐http://www.salute.gov.it/nuovocoronavirus
Italy Ministry of Health
๐ฎ๐น๐https://twitter.com/mtizzoni/status/1243525057353256960
"Initial estimates of the effects of the lockdown on the mobility and proximity of Italians"
๐ฎ๐น๐https://data.humdata.org/organization/isi-foundation-cuebiq-inc
This is a joint organization between the ISI Foundation, a research institute based in Turin Italy, and Cuebiq Inc. a location intelligence company.
๐ฎ๐น๐https://www.covid.is/
๐ฎ๐น๐https://tinyurl.com/covid-italia
Tracking of COVID-19 in Italy | Google Sheets
๐ฎ๐น๐http://arcg.is/1K0Xi40
Italian Outbreak Dashboard - WFP Emergency Division
๐ฎ๐น๐ https://github.com/pcm-dpc/COVID-19
Data Release by Italian Government
๐ฎ๐น๐https://www.epicentro.iss.it/coronavirus/bollettino/Report-COVID-2019_17_marzo-v2.pdf
Report sulle caratteristiche dei pazienti deceduti positivi a COVID-19 in Italia Il presente report รจ basato sui dati aggiornat (Report on the characteristics of COVID-19 positive patients who died in Italy This report is based on updated data) (Information on previous illnesses of victims, in Italian)
๐ฎ๐น๐ https://www.epicentro.iss.it/coronavirus/bollettino/Bollettino-sorveglianza-integrata-COVID-19_12-marzo-2020.pdf
Epidemia COVID-19 Aggiornamento nazionale 12 marzo 2020 โ ore 16:00 (Information on casualties by gender, with 70% being men)
๐ฝ๐ฐKosovo
๐ฝ๐ฐ๐https://kosova.health/en
COVID-19 - Kosovo
๐ฒ๐ฐMacedonia
ะกะพััะพัะฑะฐ ัะพ ะบะพัะพะฝะฐ ะฒะธััั (COVID - 19) ะฒะพ ะะฐะบะตะดะพะฝะธัะฐ
๐ณ๐ฑNetherlands
๐ณ๐ฑ๐ https://www.rivm.nl/nieuws/actuele-informatie-over-coronavirus
Current Information about Coronavirus
๐ณ๐ฑ๐https://tinyurl.com/covid19-nl
Tracking of COVID-19 in The Netherlands | Google Sheets
๐ต๐นPortugal
๐ต๐น๐https://covid19.min-saude.pt/relatorio-de-situacao/
Portugal Cases
https://github.com/dssg-pt/covid19pt-data
Cases and death time series with breakdown by age and region (data.csv)
Slovenia
๐ธ๐ฎ๐http://gdiljubljana.maps.arcgis.com/apps/opsdashboard/index.html#/
1cf4f90e05984ae5a365f4838f746138
Prisotnost koronavirusa (COVID-19) v Sloveniji in ukrepi
COVID-19 v Sloveniji
๐ธ๐ฐSlovakia
๐ธ๐ฐ๐https://korona.gov.sk/
Koronavรญrus na Slovensku- Overenรฉ fakty o stave, prevencii a boji s koronavรญrusom na Slovensku monitoruje Nรกrodnรฉ centrum zdravotnรญckych informรกciรญ v sรบฤinnosti s รradom vlรกdy Slovenskej republiky.
๐ช๐ธSpain
๐https://covid19.isciii.es/ & https://github.com/datadista/datasets/tree/master/COVID%2019
Coronavirus data for Spain. CSV files available (see bottom left for the first link).
๐ช๐ธ๐https://docs.google.com/spreadsheets/d/1elbDJU7WPPv5s2-rS8K9M53Og-gvCm5pV2kN87BLxpk/edit?usp=sharing
๐ฃhttps://twitter.com/samgilb
Long lists of coronavirus keywords with estimated search volumes, sourced from the search engine marketing tool SEMrush.
๐ช๐ธ๐https://www.mscbs.gob.es/profesionales/saludPublica/ccayes/alertasActual/nCov-China/situacionActual.htm
Spanish Health Ministry page on the virus,
๐ช๐ธ๐https://github.com/victorvicpal/COVID19_es
Spain csv data
Switzerland
๐https://github.com/openZH/covid_19
๐ฌ๐งUnited Kingdom
๐ฌ๐ง๐https://coronavirus.data.gov.uk/
๐ฌ๐ง๐https://www.gov.uk/government/publications/coronavirus-covid-19-number-of-cases-in-england
cases/deaths England
๐ฌ๐ง๐https://blog.ons.gov.uk/2020/03/31/counting-deaths-involving-the-coronavirus-covid-19
Round-up by UK's Office for National Statistics (ONS) of Coronavirus data they've published.
Potential COVID-19 symptoms reported through NHS Pathways and 111 online
๐ฌ๐ง๐https://blog.ons.gov.uk/2020/03/31/counting-deaths-involving-the-coronavirus-covid-19/
ONS data on deaths where COVID-19 reported on death certificate, includes deaths outside hospitals
๐ฌ๐ง๐https://www.publichealth.hscni.net/news/covid-19-coronavirus
๐ด๓ ง๓ ข๓ ณ๓ ฃ๓ ด๓ ฟ๐https://www.gov.scot/coronavirus-covid-19/
๐ด๓ ง๓ ข๓ ท๓ ฌ๓ ณ๓ ฟ๐https://phw.nhs.wales/topics/latest-information-on-novel-coronavirus-covid-19/
๐ฌ๐ง๐https://www.covidlive.co.uk/
Coronavirus Live UK - live map showing confirmed cases of Coronavirus in the UK with facility to report your own self-isolation. (move to infographics sheet?)
๐ฌ๐ง๐https://lginform.local.gov.uk/reports/view/lga-research/
covid-19-case-tracker-area-quick-view-1?mod-area=E08000019
LGA dashboard of cases by local authority, with comparators
๐ฌ๐ง๐https://covid19uk.live
Dashboard with map, charts and prediction
๐ฌ๐ง๐vv
collated dataset of tests, cases, deaths from UK public health bodies (England, Scotland, Wales, NI)
๐ฌ๐ง๐https://www.getthedata.com/covid-19/utla-by-day
Archive of the PHE Cases by Local Authority files - Each file from March 16th archived and available to download.
๐ฌ๐ง๐https://docs.google.com/spreadsheets/d/1eTKeK9vRxgw0KhvKxPCaDrfaHnxQP-n9TsLzsEymviY/htmlview
Google sheet tracking testing, cases and deaths by day
๐ฌ๐ง๐https://docs.google.com/spreadsheets/d/16sMXwMxCV1nX6RdR0-aUXvVNytiMiv_VcQXY2Qkhxwo/edit?usp=sharing
Number of tests carried out in the UK by date (table made with Wayback Machine) - now out of date
๐ฌ๐ง๐https://github.com/isjeffcom/coronvirusFigureUK
An open API includs real-time and history data from official channel
๐ฌ๐ง๐https://www.gov.uk/government/publications/emergency-department-weekly-bulletins-for-2020
UK Govt Number of People going to Emergency Departments.
๐ฌ๐ง๐https://docs.google.com/spreadsheets/d/1rWdx7ITPyAA5497T18TI1BL5Gxz-Oi7aVAVrE8f50sU/edit?usp=sharing
Search term variation data on Coronavirus - that is, what people google when they google โcoronavirusโ
Geographical scope: UK only
๐ฌ๐ง๐https://docs.google.com/spreadsheets/d/1elbDJU7WPPv5s2-rS8K9M53Og-gvCm5pV2kN87BLxpk/edit?usp=sharing
Long lists of coronavirus keywords with estimated search volumes, sourced from the search engine marketing tool SEMrush.
๐ฌ๐ง๐https://drive.google.com/drive/folders/1Kkw6WqwFiJ0vmcoMvk-ICCOFtJoh6dZ6?usp=sharing
UK Healthcare data -- note: appears to be lists of NHS organisations and performance indicators provenance unknown
๐ฌ๐ง๐https://urbanobservatory.ac.uk/
The largest set of publicly available real time urban data in the UK.
Oceania
๐ฆ๐บAustralia
Victoria Australia
๐ฆ๐บ๐https://github.com/Mike-Honey/covid-19-vic-au
Data and visualisations on public exposure sites sourced from V ealth Department Media hub.
Current status and contact tracing alerts
Active cases, recovered cases, and deaths reported by geography within Queensland.
COVID-19 cases by likely source of infection
๐ฆ๐บ๐https://data.nsw.gov.au/data/dataset/nsw-covid-19-cases-by-likely-source-of-infection
Data on cases by likely source of infection for New South Wales (NSW) in JSON and RDF.
New Zealand
๐ณ๐ฟ๐https://www.health.govt.nz/our-work/diseases-and-conditions/covid-19-novel-coronavirus
New Zealand Ministry of Health COVID-19 status updates and advice
๐ณ๐ฟ๐ https://statisticsnz.shinyapps.io/trade_dashboard/
New Zealand Trade Dashboard
Provisional indications effects of Coronavirus outbreak on New Zealand trade with China
Coronavirus: Medicine, vaccine supply disruptions likely warns Pharmac | RNZ
Datasets We Would Like
๐กRepresentative samples of populations tested regardless of symptoms (suggested here; drive through testing in South Korea of tens of thousands early on; 4% of 1097 randomly tested hospital staff infected with Coronavirus in Brabant, the Netherlands)
๐กHospitalisation rate by different ages/comorbidities (Vox article summarising infection and fatality rate by age, 23rd March) some of that
๐กCase fatality rate by age and comorbidity at the same time
๐กAudio recordings of coughs We would like to build an app that can record a cough and identify if it is likely caused by COVID-19 This will also hopefully help us track the spread of the virus.
๐กPolice arrest data (in regions with enforcement). Numbers and breakdowns by race/gender/class.
๐กTesting & case reporting protocols for each country.
๐ก Clinical features of positive and negative cases who underwent swabs test.
Project Ideas (add your own!)
Requirements to be โhigh qualityโ:
- Taken from source, e.g. PHE, not a re-publisher like JHU CSSE.
- Validated against multiple sources if available. Can then flag when other data providers have errors, thus improving data quality of all providers.
- Historical data. Some providers only give โtodayโs countโ, e.g. PHE by region.
- Tidy data. JHU CSSEโs data is forcing many to reshape it from wide to long, time that could be better spent on improved modelling.
- Localised as much as possible. COVID-19 spreads locally within communities. Good localised data may be extremely useful for researchers evaluating efficacy of different strategies.
- Automated ETL with auto-validation. CSSE has a huge number of data errors now on their published datasets (314 open issues at time of writing). Other data sources rely on manual updates. This is unacceptable and may stop if the maintainer contracts COVID-19.
๐กCoronavirus activity on Kaggle
[Evaluated as of 24th March 2020] https://www.kaggle.com/search?q=coronavirus - Other than the CORD-19 dataset below, data is mostly out of date or country breakdowns of the CSSE/Hopkins data which can be found https://www.kaggle.com/c/covid19-global-forecasting-week-1/data.
๐ก COVID-19 Open Research Dataset Challenge (CORD-19)
๐ https://www.kaggle.com/allen-institute-for-ai/CORD-19-research-challenge
An AI challenge with AI2, CZI, MSR, Georgetown, NIH & The White House
This project looks hugely worth every available effort - 30,000 studies as data, urgently needs analysis.
๐กKnowledge Graph
๐ฃ[email protected]Searchity.ai
Working with key multilaterals on a knowledge graph with curated subsets for reliable information and optimised resource allocation. This is extending the UN AI data commons initiative to a knowledge commons.
๐กConnect any data set & monitor in real-time with OpenFn
๐https://showcase.dropbox.com/s/Open-Function-Responding-to-Coronavirus-mChE6WIsDvM3jDCqiHzB3
The OpenFn integration platform offers enterprise-grade, scalable, and secure infrastructure for organizations to connect ANY app, automate data sharing, & setup real-time disease surveillance. OpenFn is offering free setup help & zero-margin licenses for projects related to the urgent COVID-19 response.
Relevant real-world case studies:
