Data


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The core content of this Data section focuses on data sets that can be downloaded and analyzed in formats such as XML and .csv. The section begins with repositories of existing data sets, followed by key existing data sets categorized by type. Later in the data section, there are requests for data sets people would like to analyze. Country-specific and subnational data sets are listed by country at the end of the Data section.

Other relevant sections of this handbook

Data Visualizations and Infographics

To keep the Data section focused on data sets, the various charts, graphics, and maps created with the data go in the Infographics section.

See also:

🔗https://coronavirustechhandbook.com/infographics

Data Tools

Scripts, codes, methods and technical resources for working with COVID-19 data

See also:

🔗 https://coronavirustechhandbook.com/data-tools

Self-reported Data and Crowdsourcing

Crowdsourcing epidemiological data,

See also:

🔗https://coronavirustechhandbook.com/self-reporting

Data Governance and Data Standards

Recommendations for how to work with COVID-19 data.

See also:

🔗https://coronavirustechhandbook.com/data-governance

Repositories of Existing Datasets

List of data on asymptomatic transmission.

🔗https://twitter.com/ErinSandersNP/status/1250081382241579008

Data Collaboratives in Response to COVID-19

🔗https://docs.google.com/document/d/1JWeD1AaIGKMPry_EN8GjIqwX4J4KLQIAqP09exZ-ENI/edit#

A repository for data collaboratives seeking to address the spread of COVID-19 and its secondary effects. Created by The Governance Lab (GovLab) based at New York University.

Severe acute respiratory syndrome Coronavirus 2 data hub

🔗https://www.ncbi.nlm.nih.gov/labs/virus/vssi/#/virus?SeqType_s=Nucleotide&VirusLineage_ss=Wuhan%20seafood%20market%20pneumonia%20virus,%20taxid:2697049

Search, retrieve, and analyze SARS-CoV-2 GenBank data, from US National Library of Medicine (NLM).

COVID-19 Data Providers by Amass Insights

🔗https://docs.google.com/spreadsheets/d/1N_aVyjQWBzPT_MHiAWyoEqNgX4nKkoU7FznVZpvFTu0/edit?usp=sharing

Directory of Coronavirus-related data providers categorised by geographical focus, type of data, data features, status (complete?), date last updated, date added.

COVID-19: a living systematic map of the evidence

🔗http://eppi.ioe.ac.uk/cms/Projects/DepartmentofHealthandSocialCare/Publishedreviews/COVID-19Livingsystematicmapoftheevidence/tabid/3765/Default.aspx

Produced by the Evidence for Policy and Practice research center at University College, London. Focuses on evidence synthesis and research application. An Evidence Map categorises datasets by topic (e.g. diagnosis, health impacts, economic impacts). Updates weekly.

COVID-19 Pandemic

🌏🔗https://data.humdata.org/event/covid-19

Humanitarian Data Exchange repository of COVID-19 datasets with option to filter by variables relevant to humanitarian response.

Open source COVID-19

🔗http://open-source-covid-19.weileizeng.com/

A global collection of Open Source projects during COVID-19. Includes data, APIs, dashboards, research and crowd collected lists.

COVID-19 Data Hub

🔗https://odileeds.org/projects/open-data-saves-lives/covid19/data-hub/

Open Data Institute (ODI) Leeds:This is a document to openly collate useful open data sources and references related to COVID-19, to support our collaborative #OpenDataSavesLives coronavirus work

Fighting Coronavirus with Tech and Data

🔗https://www.notion.so/d44664abc5424dd191fc7bab29685983?v=ae0f06065b0c47e2afbdd7f4fca4e2c4

COVID-19 Data sources compiled by GraphExt, a data science for business firm.

COVID-19 Data Repository at openICPSR

🔗https://www.openicpsr.org/openicpsr/covid19

A free self-publishing option for social/behavioral datasets related to COVID-19 provided by the Inter-university Consortium for Political and Social Research.

Analysis of data related to COVID-2019, first reported in Wuhan, China

🔗https://github.com/beoutbreakprepared/nCoV2019

Includes data on comorbidities from Global Burden of Disease.

Possible COVID-19 datasets

🔗https://docs.google.com/spreadsheets/d/1w4czUYSQ1AfOxw-H3Zei5LZAvNkQrSAGeIu60aeXkZs/edit#gid=0

Table of Possible Covid Datasets that includes the source of the data, notable features, a short description, how to access the data and a link [around 95 datasets as of 21 March 2020].

IIPC Collaborative Collection: Covid-19 outbreak

🔗https://archive-it.org/collections/13529

A collection to preserve web content related to the ongoing Novel Coronavirus (Covid-19) outbreak. Created by the Content Development Group of the International Internet Preservation Consortium in collaboration with Archive-It.

Global Coronavirus Dataset Library

🔗https://lionbridge.ai/datasets/coronavirus-datasets-from-every-country/

Some of the most widely-used coronavirus datasets. This article will be continuously updated, as new COVID-19 datasets become available.

Existing Datasets by Features

Datasets and databases for the study of COVID-19 categorize by topic. Country-specific data is listed by country at the end of the Data section.

Johns Hopkins University Case Data and Adaptations

The dataset and dashboard from Johns Hopkins University (JHU) have played a major role in tracking cases of COVID-19. This section includes a link to the JHU data as well as adaptations of that data.

Coronavirus cases, provided by Johns Hopkins CSSE

🌏🔗https://github.com/CSSEGISandData/COVID-19

Data repository for the 2019 Novel Coronavirus Visual Dashboard operated by the Johns Hopkins University Center for Systems Science and Engineering (JHU CSSE). Also, Supported by ESRI Living Atlas Team and the Johns Hopkins University Applied Physics Lab (JHU APL). Includes cases, km, recoveries. Regular updates and data from the 14 largest government agencies.

Coronavirus COVID-19 Data Repository by Johns Hopkins CSSE

🌏🔗https://github.com/CSSEGISandData/COVID-19/tree/master/csse_covid_19_data/csse_covid_19_daily_reports

The Johns Hopkins daily US and worldwide figures on COVID-19. CSV.

Coronavirus time series data on cases

🌏🔗https://github.com/datasets/covid-19

Sourced from Johns Hopkins CSSE, consolidated into normalized time series

Coronavirus time series

🌏🔗https://datahub.io/core/covid-19

Coronavirus time series listing confirmed cases, deaths and recoveries.

Coronavirus Dataset

🌏🔗https://www.kaggle.com/sudalairajkumar/novel-corona-virus-2019-dataset

Day level information on COVID-19 affected cases based on Johns Hopkins dataset.

COVID-19 cases, using data from Johns Hopkins CSSE and the New York Times

🔗https://covid-19.datasettes.com/

Johns Hopkins daily reports loaded into Datasette, so you can run SQL queries against it and export JSON or CSV.

Case Data

This section contains case data from sources other than Johns Hopkins University. Country-specific and subnational datasets are listed at the end of the data section.

European Centre for Disease Control (ECDC): Download today’s data on the geographic distribution of COVID-19 cases worldwide

🌏🔗https://www.ecdc.europa.eu/en/publications-data/download-todays-data-geographic-distribution-covid-19-cases-worldwide

Daily worldwide figures on COVID-19 cases and deaths from the ECDC. Excel, CSV, JSON, XML.

A dataset of 1000 early cases

🌏🔗https://docs.google.com/spreadsheets/d/1jS24DjSPVWa4iuxuD4OAXrE3QeI8c9BC1hSlqr-NMiU/edit#gid=1187587451

🗣 [email protected]

Each record includes First confirmed imported COVID-19 pneumonia patient in Shenzhen (from Wuhan): male, 66, Shenzhen residence, visited relatives in Wuhan on 12/29/2019, symptoms onset on 01/03/2020, returned to Shenzhen and sought medical care on 01/04/2020, hospitalized on 01/11/2019, sample sent to China CDC for testing on 01/18/2020, confirmed on 01/19/2020. 8 others under medical observation, contact tracing ongoing.

High Contagiousness and Rapid Spread of Severe Acute Respiratory Syndrome Coronavirus 2

CH🔗https://wwwnc.cdc.gov/eid/article/26/7/20-0282_article

Appendix 1 of this

2019–20 Coronavirus pandemic cases / WHO situation reports

🌏🔗https://en.wikipedia.org/wiki/Template:2019%E2%80%9320_coronavirus_pandemic_data/

WHO_situation_reports

Daily case data by country from World Health Organization situation reports.

Rolling, last-10-day Coronavirus case data spreadsheet, worldwide, by continent, and by country

🌏🔗https://spreadsheetjournalism.com/2020/04/22/corona-virus-spreadsheet-requires-excel-365/

Data source; The European Centre for Disease Prevention and Control. The workbook also features a sheet enabling the user to enter any country name in an auto-complete text box along with any time span, disclosing data for that country across the span. NOTE: requires access to the Excel 365 version.

Trial Data

Dimensions COVID-19 publications, data sets, clinical trials

🌏🔗https://docs.google.com/spreadsheets/d/1-kTZJZ1GAhJ2m4GAIhw1ZdlgO46JpvX0ZQa232VWRmw/edit#gid=1410737911

Maintained by Dimensions from Digital Science, this spreadsheet contains detailed data about COVID-19 clinical trials, publications, and other databases.

ClinicalTrials.gov

🌏🔗https://clinicaltrials.gov/ct2/results?cond=COVID&term=&cntry=&state=&city=&dist=

US National Institutes of Health (NIH) National Library of Medicine (NLM) database of COVID-19 clinical trials around the world. Showing 360+ studies as of April 7, 2020.

Policy and Government Response Data

Dataset of COVID-19 containment and mitigation measures v0.2

🌏🔗http://epidemicforecasting.org/containment

The COVID-19 forecasting project at Oxford curates a database of all sufficiently large global containment and mitigation measures focused on reducing transmission.

COVID-19 policy dataset

🌏🔗https://figshare.com/articles/CORD-19-policy_dataset/12055860/2

A zip file of policy documents from Jan 1st - Mar 31st 2020 relating to the COVID-19 pandemic. Provided by policy consulting firm Overton.

ACAPS COVID-19: Government Measures Dataset

🌏🔗 https://www.acaps.org/covid19-government-measures-dataset

[email protected]

The COVID-19 Government Measures Dataset puts together all the measures implemented by governments worldwide in response to the Coronavirus pandemic. Data collection includes secondary data review. The researched information available falls into five categories: - Social distancing - Movement restrictions - Public health measures - Social and economic measures - Human rights implications. Each category is broken down into several types of measures. ACAPS consulted government, media, United Nations, and other organisational sources.

COVID-19 GovMeasures

🌏🔗https://docs.google.com/spreadsheets/d/1ODDaxKJMG2QBy00-KC0od75SIdNzn_Nuk_d_SAMedYE/edit#gid=0

An anonymous open spreadsheet summarizing responses by country.

Search and Social Media

Coronavirus searches by date/lang/country from AnswerThePublic

🔗https://docs.google.com/spreadsheets/d/1roQeJkDBH2d2UGV85HzwAmxOHwehV2te4X7YzRcWqDI

🗣 [email protected]

Further search term variation data on coronavirus (i.e., what people google when they google “coronavirus”) Geographical scope: Various languages and countries (including Italy, Netherlands, France, Germany, Belgium, US, Mexico, Brazil, Colombia, Norway, Switzerland, UK)

Data has been collected almost daily since 20/01/2020

COVID-19 Twitter chatter dataset for scientific use

🌎🔗http://www.panacealab.org/covid19/

Dataset of tweets acquired from the Twitter Stream related to COVID-19. Includes all language, with English, Spanish, and French most prevalent.

COVID-19-TweetIDs

🌎🔗https://github.com/echen102/COVID-19-TweetIDs

The repository contains an ongoing collection of tweets IDs associated with COVID-19.

Coronavirus search term variations and volume - various countries

🌎🔗https://docs.google.com/spreadsheets/d/1elbDJU7WPPv5s2-rS8K9M53Og-gvCm5pV2kN87BLxpk/edit?usp=sharing

🗣https://twitter.com/samgilb

Long lists of Coronavirus keywords with estimated search volumes for 9 countries, sourced from the search engine marketing tool SEMrush.

Bing Coronavirus search query set

🌎🔗 https://github.com/microsoft/BingCoronavirusQuerySet

🗣 [email protected]

This dataset was curated from the Bing search logs (desktop users only) over the period of Jan 1st, 2020 – April 18th, 2020. Only searches that were issued many times by multiple users were included. Dataset includes queries from all over the world that had an intent related to the Coronavirus or COVID-19. In some cases this intent is explicit in the query itself, e.g. “Coronavirus updates Seattle” in other cases it is implicit , e.g. “Shelter in place” .Implicit intent of search queries (e.g. Toilet paper) were extracted by using Random walks on the click graph approach as outlined in this paper by Microsoft Research. All personal data was removed.

Location and Movement

Location and movement data relevant to, but not necessarily specific to, COVID-19.

Google Mobility Reports

🌏🔗https://www.blog.google/technology/health/covid-19-community-mobility-reports

Country-level reports from Google reports chart movement trends over time by geography, across different categories of places. Reports do not include raw data.

Apple Mobility data

🌏🔗 https://www.apple.com/covid19/mobility

Data from Apple on changes in use of the their 'driving', 'walking' and 'transit' queries to their 'Maps' app.

OpenTable Restaurant Performance Data

🌏🔗https://docs.google.com/spreadsheets/d/e/2PACX-1vRbPuAyJy74UmbF6kLXFGXDk2eX3N6zvRLzxPamG8FAA3E-SVqMOMSIht-eYEF_4qrNGOJuPbDjTsPD/pubhtml

Data on restaurant business by the booking platform OpenTable with daily updates.

Citymapper Mobility Index

🌏🔗https://citymapper.com/cmi

Percentage of people moving in cities compared to January.

Phone Location Data

🔗 https://www.veraset.com/ 

🗣Parker Ence: [email protected]

Veraset Data. Free dataset (for use for COVID-19 modelling only) of anonymous always-on GPS pings from smart phones. Hourly pings from roughly 1.5% of worldwide phones every hour (and pings from almost 10% of U.S. phones). Available on request.

Global Footfall Trends

🌏🔗https://purple.ai/global-footfall-trends/

Year-on-year and week-to-week comparison by geographic region/venue type from guest WiFi analytics firm purpleAI. NOTE: There doesn't seem to be any raw data available here, only charts.

Healthcare and Hospital Data

Datasets about healthcare and hospitals relevant to, but not necessarily specific to, COVID-19.

Global Dataset on ICU, Ventilators and Critical Care Capacity

🌏🔗https://docs.google.com/spreadsheets/d/1nSDwFWmnqvcP5Ut_epcntxjZrR8PcnU6enupT8G5d0s/

edit#gid=345352908

Global Dataset on ICU, Ventilators and Critical Care Capacity from Our World in Data.

Data on rates of testing

🌏🔗https://github.com/owid/covid-19-data/tree/master/public/data/testing

Data by Our World in Data on rate of Coronavirus testing for countries around the world.

Details of primers used in multiplex PCRs for SARS-CoV-2 genome amplification

🔗🇭🇰https://www.medrxiv.org/content/10.1101/2020.03.30.20045740v2.supplementary-material

Dataset included as supplementary material to the pre-print "A territory-wide study of early COVID-19 outbreak in Hong Kong community."

The Global Healthsites Mapping Project

🌏🔗https://healthsites.io/

An open data commons of health facility data built with OpenStreetMap.

Healthsites database

🌏🔗https://github.com/healthsites/healthsites/

Healthsites.io establishes this data and the tools necessary to upload, manage and make healthcare facility data easily accessible.

Healthsites API

🔗https://github.com/healthsites/healthsites/wiki/API

List of countries by hospital beds

🌏🔗https://en.wikipedia.org/wiki/List_of_countries_by_hospital_beds

Wikipedia page reporting hospital beds per 1000 people, based on OECD data.

Existing Datasets by Country                                                                

Countries are grouped by regions as organized by the UN Statistical Agency https://unstats.un.org/unsd/methodology/m49/

Africa

Coronavirus COVID-19 (2019-nCoV) Data Repository for Africa

https://github.com🔗 /dsfsi/covid19africa

Ghana

COVID-19

🇬🇭🔗https://ghanahealthservice.org/covid19/

Madagascar

Coronavirus search term variation data in French for Madagascar from Answer The Public (as at 6 April 2020): 🔗https://docs.google.com/spreadsheets/d/1DBcm9Y6ZCOoh61RNeCjROpXTJ76RiFWh_cVABTaDRe8/edit#gid=0

South Africa

Coronavirus COVID-19 (2019-nCoV) Data Repository for South Africa

🇿🇦🔗 https://github.com/dsfsi/covid19za

Americas

Novel Coronavirus

🔗https://carpha.org/What-We-Do/Public-Health/Novel-Coronavirus

COVID-19 Situation Reports for populations in Caribbean region from CARPHA.

Canada                                                        

Canadian Economic Dashboard and COVID-19

🇨🇦🔗https://www150.statcan.gc.ca/n1/pub/71-607-x/71-607-x2020009-eng.htm

Downloadable data used to create Statistics Canada's economic dashboard and interactive case map.

Public COVID-19 Canada

🇨🇦🔗https://docs.google.com/spreadsheets/d/1D6okqtBS3S2NRC7GFVHzaZ67DuTw7LX49-fqSLwJyeo/edit#gid=942958991

Also titled the "Epidemiological Data from the COVID-19 Outbreak in Canada

Alberta

COVID-19 Alberta statistics

🇨🇦🔗https://www.alberta.ca/stats/covid-19-alberta-statistics.htm

Under the "Data export" tab, details include Zone and demographic information (gender and age group), case status.

Ontario

Status of COVID-19 cases in Ontario

🔗Status of COVID-19 cases 

Ontario Data Catalog

🔗 https://data.ontario.ca/ 

United States

U.S. Consumer Activity During COVID-19 Pandemic

🇺🇸🔗https://www.safegraph.com/dashboard/covid19-commerce-patterns

An interesting dataset showing how the pandemic has changed foot traffic to Airports, Costco stores, etc. They suggest their data is voluntarily sampled and is representative of the U.S. population.

COVID-19_US_County-level_Summaries

🇺🇸🔗 https://github.com/JieYingWu/COVID-19_US_County-level_Summaries

A machine readable dataset by people at Johns Hopkins University that aggregates relevant data from around ten governmental and academic sources on the county-level. The dataset contains more than 300 variables.

New York Times data on COVID-19 for US states and counties. CSVCOVID Tracking Project

🇺🇸🔗http://covidtracking.com/

Volunteer-driven project compiling the most complete testing data available for US states and territories.

Coronavirus Disease 2019 (COVID-19)

🇺🇸🔗https://www.cdc.gov/coronavirus/2019-ncov/index.html

US Centers for Disease Control and Prevention (CDC) Coronavirus data.

US CDC Data & Statistics

🇺🇸🔗https://www.cdc.gov/datastatistics/index.html

Health data from US Centers for Disease Control and Prevention (CDC). Not COVID-19 specific.

The COVID-19 Racial Data Tracker

🇺🇸🔗https://covidtracking.com/race

The COVID Racial Data Tracker is a collaboration between the COVID Tracking Project and the Center for Antiracist Research. Together, we’re gathering the most complete race and ethnicity data on COVID-19 in the United States.

COVID-19 Cases in Massachusetts

🇺🇸🔗https://www.mass.gov/info-details/covid-19-cases-quarantine-and-monitoring#covid-19-cases-in-massachusetts-

Word document with tables breaking down data by county, demographics, and individual patients.

United States - Information by states

OH COVID-19 Dashboard

🇺🇸🔗https://coronavirus.ohio.gov/wps/portal/gov/covid-19/dashboards

Data from Ohio Department of Health and downloadable as CSV.

PA COVID-19

🇺🇸🔗https://www.health.pa.gov/topics/disease/Pages/Coronavirus.aspx

Pennsylvania cases by county.

TN Coronavirus cases

🇺🇸🔗http://arcg.is/19COL4 

Total confirmed Coronavirus cases as reported by  Department of Health. Data pulled nightly from TN Dept of Health website. Created by Vanderbilt Initiative for Interdisciplinary Geospatial Research (VIIGR).

TX COVID-19

🇺🇸🔗https://www.dshs.texas.gov/news/updates.shtm

Texas cases over time as Excel file.

VA COVID-19

🇺🇸🔗http://www.vdh.virginia.gov/surveillance-and-investigation/novel-coronavirus/

Virginia case datasets by age, sex, and race.

WA COVID-19

🇺🇸🔗https://www.doh.wa.gov/Emergencies/Coronavirus

Archive of daily reports from WA Includes table of cases and deaths by county.

WA COVID-19 google spreadsheet

🇺🇸🔗https://docs.google.com/spreadsheets/d/1bWjx_QDy-Mbg-ZUVUS-RP9hIVbxdAYJITSeSdjej4HQ/edit?usp=sharing

Google sheet compiling daily updates from Washington Department of Health.

United States - Information by Local Government (Cities and Counties)

NYC Coronavirus (COVID-19) data

🇺🇸🔗https://github.com/nychealth/coronavirus-data/blob/master/tests-by-zcta.csv

This repository contains data on Coronavirus (COVID-19) in New York City (NYC), updated daily. Data are assembled by the NYC Department of Health and Mental Hygiene (DOHMH) Incident Command System for COVID-19 Response (Surveillance and Epidemiology Branch in collaboration with Public Information Office Branch.

Asia

Hong Kong

Data in Coronavirus Disease (COVID-19)

🔗https://data.gov.hk/en-data/dataset/hk-dh-chpsebcddr-novel-infectious-agent

Indonesia

Aplikasi Satu Data Kesehatan

🇮🇩🔗https://data.kemkes.go.id/data/dhis-web-commons/security/login.action#/yHsQKWcr6Sz

Indonesia- Requires log-in.

Japan

Japan Ministry of Health: COVID-19 information page (Japanese)

🇯🇵🔗https://www.mhlw.go.jp/stf/seisakunitsuite/bunya/0000164708_00001.html

Japan Ministry of Health: COVID-19 information page (English)

🇯🇵🔗https://www.mhlw.go.jp/stf/seisakunitsuite/bunya/newpage_00032.html

Japan Ministry of Health: COVID-19 infection count/status reports, by date (Japanese)

🇯🇵🔗https://www.mhlw.go.jp/stf/seisakunitsuite/bunya/0000121431_00086.html

Tokyo COVID-19 Task Force

🇯🇵🔗https://stopcovid19.metro.tokyo.lg.jp/en/

Pakistan

Data from Pakistan

🇵🇰🔗https://www.nih.org.pk/novel-coranavirus-2019-ncov/

Singapore

Ministry of Health Singapore (MOH)

🇸🇬🔗https://www.moh.gov.sg/covid-19

COVID-19 SG Dashboard

🇸🇬🔗https://co.vid19.sg/

South Korea

#opendata4covid19

🇰🇷🔗https://hira-covid19.net/

South Korea provides open access to researchers for all COVID-19 patients based on their insurance claims for the past five years. Researchers must provide approval or exemption of the study from IRB review. To apply for research using this data, submit a 1-page research proposal either in Korean or English and a signed data use agreement as described in the Manual.

Europe

European Centre for Disease Prevention and Control

🇪🇺🔗https://www.ecdc.europa.eu/en/publications-data

European Centre for Disease Prevention and Control- Situational update worldwide

🇪🇺🔗https://www.ecdc.europa.eu/en/geographical-distribution-2019-ncov-cases

ECDC-Europe data. Situational update for the EU/EEA and the UK by the ECDC

🇪🇺🔗https://www.ecdc.europa.eu/en/cases-2019-ncov-eueea

EU Open Data portal on COVID-19

🇪🇺🔗https://data.europa.eu/euodp/en/data/dataset/covid-19-coronavirus-data

Direct access to the dataset of the latest available public data (daily situation)

EuroMOMO

🇪🇺🔗http://www.euromomo.eu/

EuroMOMO is a European mortality monitoring activity, aiming to detect and measure excess deaths related to seasonal influenza, pandemics and other public health threats. Official national mortality statistics are provided weekly from the 24 European countries in the EuroMOMO collaborative network, supported by the European Centre for Disease Prevention and Control (ECDC) and the World Health Organization (WHO).

Belgium/België

Belgium Data (no source)

🇧🇪🔗https://docs.google.com/spreadsheets/d/1AI4x1RHcnrEU7Qdn_H25sL9tHIgGN4-fCP20NDzTltk/edit?usp=sharing

Belgium Data (no source)

Czech Republic

COVID-19: Overview of the current situation in the Czech Republic

🇨🇿🔗https://onemocneni-aktualne.mzcr.cz/covid-19

Includes open datasets and newly validated datasets, especially reviews of hospitalized patients.

Estonia

Cases in the Republic of Estonia

🇪🇪🔗http://www.koroonakaart.ee

Finland

Suomen koronavirus-tartuntatilanne avoimena datana

🇫🇮🔗https://github.com/HS-Datadesk/koronavirus-avoindata#direct-interface-to-hs-data

France

Données des urgences hospitalières et de SOS médecins relatives à l'épidémie de COVID-19

🇫🇷🔗https://www.data.gouv.fr/fr/datasets/donnees-des-urgences-hospitalieres-et-de-sos-medecins-relatives-a-lepidemie-de-covid-19/ & https://github.com/opencovid19-fr/data

French government datasets on COVID-19.

Coronavirus search term variations and volume - various countries (SEMrush data at 14-Mar-20)

🇫🇷🔗https://docs.google.com/spreadsheets/d/1elbDJU7WPPv5s2-rS8K9M53Og-gvCm5pV2kN87BLxpk/edit?usp=sharing

🗣https://twitter.com/samgilb

Long lists of coronavirus keywords with estimated search volumes, sourced from the search engine marketing tool SEMrush.

Données nationales concernant l'épidémie de COVID19

🇫🇷🔗 https://github.com/opencovid19-fr/data

Source: French Gov. Open data platform

Suivi du Covid-19

🇫🇷🔗https://mapthenews.maps.arcgis.com/apps/opsdashboard/index.html#/5e09dff7cb434fb194e22261689e2887

Dataviz, French case numbers, updated on a daily basis

Source : Santé publique France

Germany

Robert Koch Institute

🇩🇪🔗https://www.rki.de/DE/Content/InfAZ/N/Neuartiges_Coronavirus/Fallzahlen.html

Robert Koch institute’s numbers of cases in Germany, by state

COVID-19-DE

🇩🇪🔗https://github.com/micgro42/COVID-19-DE

Robert Koch institute's numbers of cases in Germany as CSV timeline

COVID-19 (Coronavirus SARS-CoV-2)

🇩🇪🔗https://www.rki.de/DE/Content/InfAZ/N/Neuartiges_Coronavirus/nCoV.html

German Case Numbers

Greece

Αριθμός κρουσμάτων στην Ελλάδα

🇬🇷🔗https://docs.google.com/spreadsheets/d/1GVBY3Yy1wSzmmjwest78fVlNuH7GT7XirCWSHO7CZow/edit#gid=0

Greek case numbers, from the ministry of health press releases, updated every day

Hungary
Koronamonitor

🇭🇺🔗https://atlo.team/koronamonitor

Hungarian case numbers and maps, updated every day

Koronavírus esetek száma Magyarországon

🇭🇺🔗https://koronavirus.sixdegrees.hu/

Another data source with daily updates and a rudimentary SIR forecast

Iceland

Tilkynningar Bóluefni COVID-19

🇮🇸🔗https://www.covid.is/

Official data from the Department of Civil Protection and Emergency Management in dashboard

covid.is

🇮🇸🔗https://www.almannavarnir.is/utgefid-efni/

Official daily status reports

Italy

Dati COVID-19 Italia

🇮🇹🔗 https://github.com/pcm-dpc/COVID-19

Italian data from government. The @DPCgov shared all latest #COVID19 data on @github: National trend - JSON data - Provinces data - Regions data - Summary cards - Areas

Aggiornamento dati

🇮🇹🔗http://www.salute.gov.it/nuovocoronavirus

Italy Ministry of Health

Italy: Mobility COVID-19

🇮🇹🔗https://data.humdata.org/organization/isi-foundation-cuebiq-inc

This is a joint organization between the ISI Foundation, a research institute based in Turin Italy, and Cuebiq Inc. a location intelligence company.

COVID-19 outbreak in Italy

🇮🇹🔗http://arcg.is/1K0Xi40

Italian Outbreak Dashboard - WFP Emergency Division

Dati COVID-19 Italia

🇮🇹🔗 https://github.com/pcm-dpc/COVID-19

Data Release by Italian Government

Report sulle caratteristiche dei pazienti de ceduti positivia COVID-19 in ItaliaIl presentere portèbasatosui dati aggiornatial 17 Marzo 2020

🇮🇹🔗https://www.epicentro.iss.it/coronavirus/bollettino/Report-COVID-2019_17_marzo-v2.pdf

Report sulle caratteristiche dei pazienti deceduti positivi a COVID-19 in Italia Il presente report è basato sui dati aggiornat (Report on the characteristics of COVID-19 positive patients who died in Italy This report is based on updated data) (Information on previous illnesses of victims, in Italian)

Epidemia COVID-19

🇮🇹🔗 https://www.epicentro.iss.it/coronavirus/bollettino/Bollettino-sorveglianza-integrata-COVID-19_12-marzo-2020.pdf

Epidemia COVID-19 Aggiornamento nazionale 12 marzo 2020 – ore 16:00 (Information on casualties by gender, with 70% being men)

Kosovo

COVID-19 - Kosovo

🇽🇰🔗https://kosova.health/en

COVID-19 - Kosovo

Macedonia

Состојба со корона вирус (COVID - 19) во Македонија

🇲🇰🔗http://gdi-sk.maps.arcgis.com/apps/opsdashboard/index.html?fbclid=IwAR09e9gqT2DsoksCkMaJcYUtbqcA5LaALncmRAOGgvtIyoSmG5lnPDfwPKs#/2096bd4b051b42948ac3f5747e80c3a5

Состојба со корона вирус (COVID - 19) во Македонија

Netherlands

Actuele informatie over het nieuwe coronavirus (COVID-19)

🇳🇱🔗 https://www.rivm.nl/nieuws/actuele-informatie-over-coronavirus

Current Information about Coronavirus

COVID-19 in Netherlands - tinyurl.com/covid19-nl - Flatten The Curve!

🇳🇱🔗https://tinyurl.com/covid19-nl

Tracking of COVID-19 in The Netherlands | Google Sheets

Portugal

Portugal Cases

🇵🇹🔗https://covid19.min-saude.pt/relatorio-de-situacao/

https://github.com/dssg-pt/covid19pt-data

Cases and death time series with breakdown by age and region (data.csv)

Slovenia

Prisotnost koronavirusa (COVID-19) v Sloveniji in ukrepi

🇸🇮🔗http://gdiljubljana.maps.arcgis.com/apps/opsdashboard/index.html#/

1cf4f90e05984ae5a365f4838f746138

Prisotnost koronavirusa (COVID-19) v Sloveniji in ukrepi

COVID-19 Sledilnik - COVID-19 Slovenia Tracking

🇸🇮🔗https://docs.google.com/spreadsheets/d/1N1qLMoWyi3WFGhIpPFzKsFmVE0IwNP3elb_c18t2DwY/edit?ts=5e6a2b50#gid=328677411

COVID-19 v Sloveniji

Slovakia

Koronavírus a Slovensko

🇸🇰🔗https://korona.gov.sk/

Koronavírus na Slovensku- Overené fakty o stave, prevencii a boji s koronavírusom na Slovensku monitoruje Národné centrum zdravotníckych informácií v súčinnosti s Úradom vlády Slovenskej republiky.

🇪🇸Spain

COVID-19

🔗https://covid19.isciii.es/ & https://github.com/datadista/datasets/tree/master/COVID%2019

Coronavirus data for Spain. CSV files available (see bottom left for the first link).

Coronavirus search term variations and volume

🇪🇸🔗https://docs.google.com/spreadsheets/d/1elbDJU7WPPv5s2-rS8K9M53Og-gvCm5pV2kN87BLxpk/edit?usp=sharing

🗣https://twitter.com/samgilb

Long lists of coronavirus keywords with estimated search volumes, sourced from the search engine marketing tool SEMrush.

Situación actual

🇪🇸🔗https://www.mscbs.gob.es/profesionales/saludPublica/ccayes/alertasActual/nCov-China/situacionActual.htm

Spanish Health Ministry page on the virus.

COVID19 Spain cases

🇪🇸🔗https://github.com/victorvicpal/COVID19_es

Spain csv data

Switzerland

SARS-CoV-2 open government data reported by the Swiss Cantons and the Principality of Liechtenstein

🔗https://github.com/openZH/covid_19

United Kingdom

Coronavirus (COVID-19) in the UK 

🇬🇧🔗https://coronavirus.data.gov.uk/

Counting deaths involving the coronavirus (COVID-19)

🇬🇧🔗https://blog.ons.gov.uk/2020/03/31/counting-deaths-involving-the-coronavirus-covid-19

Round-up by UK's Office for National Statistics (ONS) of Coronavirus data they've published.

[MI] Potential COVID-19 symptoms reported through NHS Pathways and 111 online

🇬🇧🔗https://digital.nhs.uk/data-and-information/publications/statistical/mi-potential-covid-19-symptoms-reported-through-nhs-pathways-and-111-online

Potential COVID-19 symptoms reported through NHS Pathways and 111 online.

COVID-19: What is the situation in Northern Ireland?

🇬🇧🔗https://www.publichealth.hscni.net/news/covid-19-coronavirus

CovidLiveUK

🇬🇧🔗https://www.covidlive.co.uk/

Coronavirus Live UK -  live map showing confirmed cases of Coronavirus in the UK with facility to report your own self-isolation.

COVID-19 Cases Tracker - Quick View for Sheffield

🇬🇧🔗https://lginform.local.gov.uk/reports/view/lga-research/

covid-19-case-tracker-area-quick-view-1?mod-area=E08000019

LGA dashboard of cases by local authority, with comparators

Coronavirus: Local Authority Cases by Day

🇬🇧🔗https://www.getthedata.com/covid-19/utla-by-day

Archive of the PHE Cases by Local Authority files - Each file from March 16th archived and available to download.

UK Coronavirus/COVID-19 Figures - tracking, statistics and breakdowns

🇬🇧🔗https://docs.google.com/spreadsheets/d/1eTKeK9vRxgw0KhvKxPCaDrfaHnxQP-n9TsLzsEymviY/htmlview

Google sheet tracking testing, cases and deaths by day

UK testing stats from daily report

🇬🇧🔗https://docs.google.com/spreadsheets/d/16sMXwMxCV1nX6RdR0-aUXvVNytiMiv_VcQXY2Qkhxwo/edit?usp=sharing

Number of tests carried out in the UK by date (table made with Wayback Machine) - now out of date

Emergency department: weekly bulletins for 2020

🇬🇧🔗https://www.gov.uk/government/publications/emergency-department-weekly-bulletins-for-2020

UK Govt Number of People going to Emergency Departments.

Google searches for Coronavirus (UK)

🇬🇧🔗https://docs.google.com/spreadsheets/d/1rWdx7ITPyAA5497T18TI1BL5Gxz-Oi7aVAVrE8f50sU/edit?usp=sharing

Search term variation data on Coronavirus - that is, what people google when they google “coronavirus”

Geographical scope: UK only

Healthcare UK Data OSINT

🇬🇧🔗https://drive.google.com/drive/folders/1Kkw6WqwFiJ0vmcoMvk-ICCOFtJoh6dZ6?usp=sharing

UK Healthcare data -- note: appears to be lists of NHS organisations and performance indicators provenance unknown

Urban Observatory

🇬🇧🔗https://urbanobservatory.ac.uk/

The largest set of publicly available real time urban data in the UK.

Crowdsourced record of workers dying of COVID-19 or falling ill at work

🔗https://docs.google.com/spreadsheets/u/2/d/1aGSFDB7Rv0Lc69PqNxPorv2QCfwD09llFA1uUh2D0ps/htmlview

Oceania

Australia

Victoria Australia

🇦🇺🔗https://github.com/Mike-Honey/covid-19-vic-au

Data and visualisations on public exposure sites sourced from V ealth Department Media hub.

Current status and contact tracing alerts

🇦🇺🔗https://www.qld.gov.au/health/conditions/health-alerts/coronavirus-covid-19/current-status/current-status-and-contact-tracing-alerts

Active cases, recovered cases, and deaths reported by geography within Queensland.

COVID-19 cases by likely source of infection

🇦🇺🔗https://data.nsw.gov.au/data/dataset/nsw-covid-19-cases-by-likely-source-of-infection

Data on cases by likely source of infection for New South Wales (NSW) in JSON and RDF.

New Zealand    

COVID-19 (novel coronavirus)

🇳🇿🔗https://www.health.govt.nz/our-work/diseases-and-conditions/covid-19-novel-coronavirus

New Zealand Ministry of Health COVID-19 status updates and advice

Trade Dashboard

🇳🇿🔗 https://statisticsnz.shinyapps.io/trade_dashboard/

New Zealand Trade Dashboard

Provisional indications – effects of coronavirus outbreak on New Zealand trade with China

🇳🇿🔗 https://www.stats.govt.nz/experimental/provisional-indications-effects-of-coronavirus-outbreak-on-new-zealand-trade-with-china

Provisional indications effects of Coronavirus outbreak on New Zealand trade with China

Datasets We Would Like

💡Representative samples of populations tested regardless of symptoms (suggested here; drive through testing in South Korea of tens of thousands early on; 4% of 1097 randomly tested hospital staff infected with Coronavirus in Brabant, the Netherlands)

💡Hospitalisation rate by different ages/comorbidities (Vox article summarising infection and fatality rate by age, 23rd March)  some of that

💡Case fatality rate by age and comorbidity at the same time

💡Audio recordings of coughs We would like to build an app that can record a cough and identify if it is likely caused by COVID-19 This will also hopefully help us track the spread of the virus.

💡Police arrest data (in regions with enforcement). Numbers and breakdowns by race/gender/class.

💡Testing & case reporting protocols for each country.

💡 Clinical features of positive and negative cases who underwent swabs test.

Project Ideas (add your own!)                                                                    

Requirements to be “high quality”:

  • Taken from source, e.g. PHE, not a re-publisher like JHU CSSE.
  • Validated against multiple sources if available. Can then flag when other data providers have errors, thus improving data quality of all providers.
  • Historical data. Some providers only give “today’s count”, e.g. PHE by region.
  • Tidy data. JHU CSSE’s data is forcing many to reshape it from wide to long, time that could be better spent on improved modelling.
  • Localised as much as possible. COVID-19 spreads locally within communities. Good localised data may be extremely useful for researchers evaluating efficacy of different strategies.
  • Automated ETL with auto-validation. CSSE has a huge number of data errors now on their published datasets (314 open issues at time of writing). Other data sources rely on manual updates. This is unacceptable and may stop if the maintainer contracts COVID-19.

💡Coronavirus activity on Kaggle

[Evaluated as of 24th March 2020] https://www.kaggle.com/search?q=coronavirus - Other than the CORD-19 dataset below, data is mostly out of date or country breakdowns of the CSSE/Hopkins data which can be found https://www.kaggle.com/c/covid19-global-forecasting-week-1/data.

💡 COVID-19 Open Research Dataset Challenge (CORD-19)

🔗 https://www.kaggle.com/allen-institute-for-ai/CORD-19-research-challenge

An AI challenge with AI2, CZI, MSR, Georgetown, NIH & The White House

This project looks hugely worth every available effort - 30,000 studies as data, urgently needs analysis.

💡Knowledge Graph

🗣[email protected]Searchity.ai

Working with key multilaterals on a knowledge graph with curated subsets for reliable information and optimised resource allocation. This is extending the UN AI data commons initiative to a knowledge commons.

💡Connect any data set & monitor in real-time with OpenFn

🔗https://showcase.dropbox.com/s/Open-Function-Responding-to-Coronavirus-mChE6WIsDvM3jDCqiHzB3

🗣[email protected]

The OpenFn integration platform offers enterprise-grade, scalable, and secure infrastructure for organizations to connect ANY app, automate data sharing, & setup real-time disease surveillance. OpenFn is offering free setup help & zero-margin licenses for projects related to the urgent COVID-19 response.